../../tmp/servers/virsirnadb/133110241
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1759 | 1 | gcccattacaatattgtaacc | 21 | |
| NC_001526.2 | Human papillomavirus type 16, complete genome | 709 | ..................... | 729 | 100 |
| NC_001526.2 | Human papillomavirus type 16, complete genome | 727 | _____..............__ | 714 | 66 |
| NC_001526.2 | Human papillomavirus type 16, complete genome | 4370 | ____..........g.a.___ | 4383 | 57 |
| NC_001526.2 | Human papillomavirus type 16, complete genome | 1640 | _______..........____ | 1631 | 47 |
| NC_001526.2 | Human papillomavirus type 16, complete genome | 1631 | _______..........____ | 1640 | 47 |
| NC_001526.2 | Human papillomavirus type 16, complete genome | 4385 | ____.c.t.c.........__ | 4371 | 57 |
| NC_012213.1 | Human papillomavirus type 108, complete genome | 2835 | _..a.a..........gg... | 2854 | 76 |
| NC_012213.1 | Human papillomavirus type 108, complete genome | 2849 | ________..........___ | 2840 | 47 |
| NC_010226.1 | Canine papillomavirus 4, complete genome | 1106 | .g.a..........c.cc... | 1126 | 76 |
| NC_001690.1 | Human papillomavirus type 48, complete genome | 2153 | __.........g..gc...__ | 2169 | 66 |
| NC_001693.1 | Human papillomavirus type 60, complete genome | 2661 | _..a.a.........._____ | 2675 | 61 |
| NC_001693.1 | Human papillomavirus type 60, complete genome | 2679 | ____..cc..........___ | 2666 | 57 |
| NC_010329.1 | Human papillomavirus type 88, complete genome | 2630 | _..a.a.........._____ | 2644 | 61 |
| NC_010329.1 | Human papillomavirus type 88, complete genome | 2644 | ________..........___ | 2635 | 47 |
| NC_001676.1 | Human papillomavirus 54, complete genome | 3819 | _____.........a...___ | 3807 | 57 |
| NC_001676.1 | Human papillomavirus 54, complete genome | 3807 | ______...t.........__ | 3819 | 57 |
| NC_014956.1 | Human papillomavirus type 134, complete genome | 2527 | __...a.........______ | 2515 | 57 |
| NC_004104.1 | Human papillomavirus type 90, complete genome | 6462 | __________........... | 6472 | 52 |
| NC_014954.1 | Human papillomavirus type 131, complete genome | 3863 | ...........__________ | 3873 | 52 |
| NC_008184.1 | Tursiops truncatus papillomavirus 2, complete genome | 2294 | ____...........______ | 2304 | 52 |
| NC_008184.1 | Tursiops truncatus papillomavirus 2, complete genome | 2304 | _________..........__ | 2295 | 47 |
| NC_003973.1 | Psittacus erithacus timneh papillomavirus, complete genome | 2887 | ___..........aaa..c.. | 2870 | 66 |
| NC_001691.1 | Human papillomavirus type 50, complete genome | 6823 | _.a..g.........______ | 6810 | 57 |
| NC_011531.1 | Chelonia mydas papillomavirus 1, complete genome | 5825 | _.g..a.........______ | 5838 | 57 |
| NC_001541.1 | Cottontail rabbit papillomavirus, complete genome | 6864 | _________.........c.. | 6853 | 52 |
| NC_008189.1 | Human papillomavirus type 101, complete genome | 4489 | ________..c........._ | 4500 | 52 |
| NC_013035.1 | Human papillomavirus 116, complete genome | 2290 | ___.c..........______ | 2301 | 52 |
| NC_013035.1 | Human papillomavirus 116, complete genome | 2301 | _________..........__ | 2292 | 47 |
| NC_001605.1 | Mastomys natalensis papillomavirus, complete genome | 4891 | _______..........____ | 4882 | 47 |
| NC_001605.1 | Mastomys natalensis papillomavirus, complete genome | 4882 | _______..........____ | 4891 | 47 |
| NC_002232.1 | Rabbit oral papillomavirus, complete genome | 5733 | _..........__________ | 5742 | 47 |
| NC_006951.1 | Erethizon dorsatum papillomavirus type 1, complete genome | 2749 | ..........___________ | 2740 | 47 |
| NC_014955.1 | Human papillomavirus type 132, complete genome | 4999 | __.t.........aac.t... | 5017 | 66 |
| NC_001354.1 | Human papillomavirus type 41, complete genome | 5701 | _________..........__ | 5692 | 47 |
| NC_001354.1 | Human papillomavirus type 41, complete genome | 5692 | _____..........______ | 5701 | 47 |
| NC_001583.1 | Human papillomavirus type 26, complete genome | 1624 | _______..........____ | 1615 | 47 |
| NC_001583.1 | Human papillomavirus type 26, complete genome | 1615 | _______..........____ | 1624 | 47 |
| NC_010739.1 | Ursus maritimus papillomavirus 1, complete genome | 4304 | ___..........________ | 4313 | 47 |
| NC_010739.1 | Ursus maritimus papillomavirus 1, complete genome | 373 | __.........cc..c.____ | 359 | 57 |
| NC_011109.1 | Tursiops truncatus papillomavirus type 1, complete genome | 2776 | _______..........____ | 2767 | 47 |
| NC_011109.1 | Tursiops truncatus papillomavirus type 1, complete genome | 2767 | _______..........____ | 2776 | 47 |
| NC_011765.1 | Erinaceus europaeus papillomavirus, complete genome | 4989 | .g..c.gc.........____ | 5005 | 61 |
| NC_004197.1 | Bovine papillomavirus 3, complete genome | 4221 | ____.........gg.c.t.. | 4237 | 61 |
| NC_001789.1 | Ovine papillomavirus - 1, complete genome | 1094 | _____.g.........g.c._ | 1108 | 57 |
| NC_001789.1 | Ovine papillomavirus - 1, complete genome | 1106 | ______.c.........c.__ | 1094 | 52 |
| NC_014469.1 | Gammapapillomavirus HPV127, complete genome | 1245 | ..at.a.........______ | 1231 | 57 |
| NC_001458.1 | Human papillomavirus type 63, complete genome | 3983 | ____.c.c.c.........__ | 3969 | 57 |
| NC_001458.1 | Human papillomavirus type 63, complete genome | 3969 | _____.........g.g.___ | 3981 | 52 |
| NC_001587.1 | Human papillomavirus type 34, complete genome | 3802 | ______..t.ca......... | 3788 | 57 |
| NC_015325.1 | Zalophus californianus papillomavirus 1, complete genome | 7501 | ____.c.........ca..__ | 7487 | 57 |
| NC_015325.1 | Zalophus californianus papillomavirus 1, complete genome | 7487 | _____..tg.........___ | 7499 | 52 |
| NC_004195.1 | Bovine papillomavirus type 5, complete genome | 3776 | _.g.........c._______ | 3788 | 52 |
| NC_006564.1 | Canine papillomavirus 2, complete genome | 4276 | ____.c.........t.____ | 4288 | 52 |
| NC_012486.1 | Human papillomavirus type 112, complete genome | 282 | ________.........c.a. | 294 | 52 |